The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.
The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.
The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.
The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.
The Sub Total is the result of the following calculation. For more information please click on "Readme" in the top left of the report.
The Total Score is the result of the following calculation. For more information please click on "Readme" in the top left of the report.
Universally blocked reactions are reactions that during Flux Variability Analysis cannot carry any flux while all model boundaries are open. Generally blocked reactions are caused by network gaps, which can be attributed to scope or knowledge gaps. Implementation: Use flux variability analysis (FVA) implemented in cobra.flux_analysis.find_blocked_reactions with open_exchanges=True. Please refer to the cobrapy documentation for more information: https://cobrapy.readthedocs.io/en/stable/autoapi/cobra/flux_analysis/ variability/index.html#cobra.flux_analysis.variability. find_blocked_reactions
There are 212 (18.81%) blocked reactions in the model: HYDA, PPBNGS, HMBS, ADMDC, GTHPi, ...
Dead-ends are metabolites that can only be produced but not consumed by reactions in the model. They may indicate the presence of network and knowledge gaps. Implementation: Find dead-end metabolites structurally by considering only reaction equations and reversibility. FBA is not carried out.
A total of 31 (3.60%) metabolites are not consumed by any reaction of the model: adocbl_c, tcynt_c, psuri5p_c, 1pyr5c_c, thpglu_c, ...